PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof010993
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family ERF
Protein Properties Length: 244aa    MW: 26451.7 Da    PI: 4.5267
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-82893PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.5e-181564255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
               +y+GVr+++ +g+W+AeIrdp+    +  r++lg+f +ae Aa a+++a++  +g
  Sof010993 15 QYRGVRRRP-WGKWAAEIRDPV----KgVRVWLGTFPSAEAAALAYDHAARDVRG 64
               69*******.**********75....44**********************98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.70E-191471No hitNo description
Gene3DG3DSA:3.30.730.101.1E-311574IPR001471AP2/ERF domain
SMARTSM003805.2E-361578IPR001471AP2/ERF domain
PROSITE profilePS5103224.1571572IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-221573IPR016177DNA-binding domain
PfamPF008471.8E-111664IPR001471AP2/ERF domain
PRINTSPR003672.1E-101627IPR001471AP2/ERF domain
PRINTSPR003672.1E-103854IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
XQEEQPSRRF KPAQQYRGVR RRPWGKWAAE IRDPVKGVRV WLGTFPSAEA AALAYDHAAR  60
DVRGPRAKLN FPSSSSAAAG APASRKRARA DDAIIDLVDQ EEQEQRAAAE TLKHEATDES  120
SGSGALPDFS WQGESAAYGE VPALDIEAGQ SGDKKRPRTE PESTEDEASP RASSGSNRTQ  180
LFDALLFGDQ VGLFDAGAYD SLDSLFSADA VQSTAVPLWS FDDGCLVEDN LSFRILTTSA  240
VTVW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-211472463ATERF1
3gcc_A1e-211472463ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.165351e-56crown| meristem| root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002465747.11e-105ethylene-responsive transcription factor 1
TrEMBLB6STB69e-81B6STB6_MAIZE; Ethylene-responsive element binding protein 2
STRINGSb01g045040.11e-105(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.14e-22ethylene-responsive element binding protein