PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof011032
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family GRAS
Protein Properties Length: 243aa    MW: 27268.4 Da    PI: 9.9448
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-129351PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS188.83.7e-58392421205
       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                l++lL++cA+av+s+d + a++lL +++++asp+gd++qRla++f+e+L+arla+++s +y++l +++ts    ++ l+a++l+  +  + k++++ +N+
  Sof011032  39 LRTLLVHCAQAVASDDRRSATELLRQIKQHASPQGDATQRLAHCFAEGLQARLASTGSMVYQSLMAKRTS---AVDILQAYQLYMAAICFKKVAFVFTNH 135
                6789************************************************************999998...9************************** PP

       GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                +I++a+ g++++Hi+ ++i++G+QWp+ l+ +a+R++gpp++RiTg++ p++g   ++++eetg+rL+k+A+++gvpf+ ++++a+++e+++ e+L+++p
  Sof011032 136 TIYNATLGKKKIHIVEYGINYGFQWPCYLRWIADREGGPPEVRITGIDLPQPGfrPTQRIEETGRRLSKYAQQFGVPFKLQAIAASKMESIRAEDLNLDP 235
                ****************************************************9*********************************************** PP

       GRAS 199 gEalaVn 205
                 E+  V+
  Sof011032 236 XEVXXVK 242
                **98886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.50913243IPR005202Transcription factor GRAS
PfamPF035141.3E-5539242IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
XELPGQGLRI AMQEEAAKKE FAVNGKVKGR RGGRDVVDLR TLLVHCAQAV ASDDRRSATE  60
LLRQIKQHAS PQGDATQRLA HCFAEGLQAR LASTGSMVYQ SLMAKRTSAV DILQAYQLYM  120
AAICFKKVAF VFTNHTIYNA TLGKKKIHIV EYGINYGFQW PCYLRWIADR EGGPPEVRIT  180
GIDLPQPGFR PTQRIEETGR RLSKYAQQFG VPFKLQAIAA SKMESIRAED LNLDPXEVXX  240
VKW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-294624326219Protein SCARECROW
5b3h_A1e-294624325218Protein SCARECROW
5b3h_D1e-294624325218Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.65251e-111bud| callus| crown| inflorescence| meristem| root| seed| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in cotyledons, leaves and flowers, and in the elongation zone in root. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008660921.11e-143scarecrow-like protein 34
SwissprotO809333e-73SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A1D6KE601e-144A0A1D6KE60_MAIZE; Uncharacterized protein
TrEMBLA0A317YGL21e-142A0A317YGL2_MAIZE; Scarecrow-like protein 9
TrEMBLA0A3L6SY941e-142A0A3L6SY94_PANMI; Uncharacterized protein
STRINGGRMZM2G179325_P011e-143(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-72GRAS family protein