PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof011076

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

LBD

Protein Properties

Length: 243aa MW: 26183 Da PI: 8.4876

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Sof#S17281579	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	67.1	4.1e-21	2	92	15	99
DUF260 15 dCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 C+++p++ p++q++++ +++k++G++ +l+l++a+p++ r+++++sl+yeA+ r+ +PvyGavg++++++++++q+++e++l ++ Sof011076 2 ACTIRPCLqwiksPDAQANATIFLAKFYGRAGLLNLIAAAPTDAlRPAVFRSLLYEACGRIVNPVYGAVGLLWSGTWHMCQAAVEAVLKGA 92 6*********9***********************99988**************************************998766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	11.695	1	94	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.1E-15	2	88	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
XACTIRPCLQ WIKSPDAQAN ATIFLAKFYG RAGLLNLIAA APTDALRPAV FRSLLYEACG 60 RIVNPVYGAV GLLWSGTWHM CQAAVEAVLK GAPIVQVSPD DAAAYDIRHV FPKSSSSNKQ 120 SPAAAAPAQS KVDDKDKHTD RGLLHKVSKP KFKRTSSSPP SKKTKTTTQN NKPHLAAASP 180 ATEHHNDDDD DMLVADHSDE EVQHAALRQA SNSNAKSRRA SPDDCDRHSA SASLDTEEGR 240 SYV

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.15679	0.0	bud\| callus\| crown\| leaf\| meristem\| root\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269\|PubMed:12068116}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021304107.1	1e-101	uncharacterized protein LOC8066567
Swissprot	Q9ZW96	2e-53	LBD40_ARATH; LOB domain-containing protein 40
TrEMBL	A0A1B6PAI1	1e-100	A0A1B6PAI1_SORBI; Uncharacterized protein
STRING	Sb09g030780.1	1e-111	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	3e-54	LOB domain-containing protein 41