PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof011158
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family WRKY
Protein Properties Length: 242aa    MW: 27153.9 Da    PI: 8.2717
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17274670PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY955.4e-30155560
               S-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
       WRKY  5 ynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60
               ynWrKYGqK+vkgse+prsYY+Ct+++C+vkk +ers  d++++e++Y+g+Hnh+k
  Sof011158  1 YNWRKYGQKHVKGSENPRSYYKCTHPNCEVKKLLERSL-DGQITEVVYKGRHNHPK 55
               9*************************************.***************85 PP
2WRKY105.43e-33171229159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+Wr YGqK+vkg+++prsYY+Ct++gCpv+k+ver+++dpk v++tYeg+Hnhe
  Sof011158 171 LDDGYRWRXYGQKVVKGNPNPRSYYKCTHTGCPVRKHVERASHDPKSVITTYEGKHNHE 229
                59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007745.3E-29155IPR003657WRKY domain
PfamPF031061.9E-22154IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.1E-24157IPR003657WRKY domain
SuperFamilySSF1182903.27E-22156IPR003657WRKY domain
PROSITE profilePS5081122.86156IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.9E-37156231IPR003657WRKY domain
SuperFamilySSF1182901.1E-29163231IPR003657WRKY domain
PROSITE profilePS5081137.631166231IPR003657WRKY domain
SMARTSM007741.3E-37171230IPR003657WRKY domain
PfamPF031064.2E-26172229IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
YNWRKYGQKH VKGSENPRSY YKCTHPNCEV KKLLERSLDG QITEVVYKGR HNHPKPQPNR  60
RLAAGAVPSS QGEERYDGVA PIEDKPSNIY SNLCNQVHSA GMIDTVPGPA SDDDVDAGGG  120
RPYPGDDTND DDDLDSKRRK MESAGIDAAL MGKPNREPRV VVQTVSEVDI LDDGYRWRXY  180
GQKVVKGNPN PRSYYKCTHT GCPVRKHVER ASHDPKSVIT TYEGKHNHEV PAFQECKAMR  240
CS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-361232878Probable WRKY transcription factor 4
2lex_A1e-361232878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.146940.0bud| crown| inflorescence| meristem| root| seed| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Peak of expression 12 days after pollination. {ECO:0000269|PubMed:12953112}.
UniprotTISSUE SPECIFICITY: Expressed in endosperm, but not in leaves. {ECO:0000269|PubMed:12953112}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in starch synthesis (PubMed:12953112). Acts as a transcriptional activator in sugar signaling (PubMed:16167901). Interacts specifically with the SURE and W-box elements, but not with the SP8a element (PubMed:12953112). {ECO:0000269|PubMed:12953112, ECO:0000269|PubMed:16167901}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by sugar. {ECO:0000269|PubMed:12953112}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021310435.11e-161WRKY transcription factor SUSIBA2-like isoform X1
RefseqXP_021310436.11e-162WRKY transcription factor SUSIBA2-like isoform X2
SwissprotQ6VWJ61e-149WRK46_HORVU; WRKY transcription factor SUSIBA2
TrEMBLA0A1B6QF721e-160A0A1B6QF72_SORBI; Uncharacterized protein
STRINGSb02g037660.11e-160(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.11e-93WRKY family protein