PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof011214

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

NF-YA

Protein Properties

Length: 241aa MW: 26633.9 Da PI: 9.3395

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-38501	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	106.9	1.6e-33	132	188	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq Rakle+e+kl ksrkpylheSRh hA++R+Rg+gGrF Sof011214 132 EEPIYVNAKQYHAILRRRQLRAKLEAENKL-VKSRKPYLHESRHLHAMKRARGTGGRF 188 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.1E-38	130	191	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	39.221	131	191	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	7.1E-29	133	188	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.1E-24	134	156	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	136	156	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	1.1E-24	165	188	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MRHNGTVMIQ FGHQMPDYDS PATQSTSESH QEVSGMSEGS LNEHNDHSGN LDGYSKSDEN 60 KMMSALSLGN PETGYAHPKP DRTQSFAISY PYADPYYGGA VAAYGSPAIM HPQLVGMVSS 120 SRVPLPIEPA AEEPIYVNAK QYHAILRRRQ LRAKLEAENK LVKSRKPYLH ESRHLHAMKR 180 ARGTGGRFLN TKQQPESPGS GVGGSSDAQR VPTNGGLFTK HEYSLPPCDR HHYHXRRGXA 240 X

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	1e-23	132	202	2	76	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.4446	0.0	bud\| crown\| inflorescence\| leaf\| meristem\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269\|PubMed:11250072}.

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002465770.1	1e-155	nuclear transcription factor Y subunit A-7 isoform X2
Swissprot	Q9LVJ7	2e-42	NFYA6_ARATH; Nuclear transcription factor Y subunit A-6
TrEMBL	C5WVV8	1e-154	C5WVV8_SORBI; Uncharacterized protein
STRING	Sb01g045500.1	1e-154	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14020.1	3e-40	nuclear factor Y, subunit A6

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]