PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof011238
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family MYB_related
Protein Properties Length: 241aa    MW: 26316.4 Da    PI: 7.0611
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-71993PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.65.1e-07140189147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv av++lG+g+W+ +  +     k+Rt  ++k++w ++
        Sof011238 140 RRPFSVAEVEALVLAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 189
                      6789999*******************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.402135194IPR017930Myb domain
SMARTSM007171.9E-6139192IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-10140190IPR009057Homeodomain-like
CDDcd116602.43E-18141191No hitNo description
SuperFamilySSF466896.32E-16141222IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
XDSKTLIQAG IGQDDMLDNL GFSLEPNCTQ NPQVQAPEDI SFLETIDTTE PLARIAPADS  60
CSKHGEVDVS QELALTPLAM NYQGSDHDSV HSPGGVSSPD KVSTNSRALV PVAAADPNAG  120
AIVPAKKSKR SPEQGQRRIR RPFSVAEVEA LVLAVEKLGT GRWRDVKLRA FDNAKHRTYV  180
DLKDKWKTLV HTASISPQQR RGEPVPQELL DRVLAAQAYW SQQQAKLQPK TPPLAEARLL  240
T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A4e-571262264103Telomere binding protein TBP1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.127911e-100bud| callus| inflorescence| root| seed| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed ubiquitously. {ECO:0000269|PubMed:15364931}.
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021321659.11e-167telomere repeat-binding protein 5
RefseqXP_021321664.11e-167telomere repeat-binding protein 5
SwissprotQ6R0E34e-72TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLA0A1B6QP341e-166A0A1B6QP34_SORBI; Uncharacterized protein
STRINGSb01g039650.11e-167(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.13e-64TRF-like 2