PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof011246

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

MYB_related

Protein Properties

Length: 241aa MW: 25948.3 Da PI: 6.6779

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-78511	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	35.6	2.2e-11	56	108	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwqkyl 48 W t E++ll++av+++G+ +W+++a +++ g+t+ +c++r++ ++ Sof011246 56 WGTLEELLLACAVTRHGTASWDSVAMEVQtrspvaarPGLTPHSCRLRFRHLR 108 9999*********************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	7.8E-4	52	110	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.25E-5	53	110	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.9E-5	55	108	IPR009057	Homeodomain-like
Pfam	PF00249	1.8E-9	56	107	IPR001005	SANT/Myb domain
CDD	cd00167	2.87E-4	56	90	No hit	No description
PROSITE profile	PS50090	6.249	56	108	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
XNGGKGNGQG GAESLRPHLH CLTGENAGRM ADGSDGTDVS PESEATAAAV KGGEIWGTLE 60 ELLLACAVTR HGTASWDSVA MEVQTRSPVA ARPGLTPHSC RLRFRHLRRR FSTVGSGGEE 120 AEAEAEAEED PDASAAEGWV DELRRLRVAE LRRDVERCDL SIGSLQSKVK RLKEERERSV 180 SGEGKPDEVN VNDRLSSPSE EPGRSCRESN STDLKPPKPP ATKAAAAAPK RMRLRTRMPP 240 X

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.18470	0.0	bud\| inflorescence\| leaf\| meristem\| root\| stem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002462574.2	1e-120	uncharacterized protein LOC8055879
TrEMBL	C5X3Y2	1e-100	C5X3Y2_SORBI; Uncharacterized protein
STRING	Sb02g028460.1	1e-101	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60110.1	1e-13	DNA-binding bromodomain-containing protein