PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof011292
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family ERF
Protein Properties Length: 240aa    MW: 26167.6 Da    PI: 10.3954
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-21896PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.42.3e-20156205255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++a+ +l+g
  Sof011292 156 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEDAALAYDKAAFRLRG 205
                59******9.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.12E-30155213No hitNo description
SMARTSM003802.9E-35156219IPR001471AP2/ERF domain
PROSITE profilePS5103222.563156213IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-31156213IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-22156213IPR016177DNA-binding domain
PRINTSPR003673.3E-11157168IPR001471AP2/ERF domain
PfamPF008471.1E-13157205IPR001471AP2/ERF domain
PRINTSPR003673.3E-11179195IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MAAAIDMYKY FNAHQIASSS PSDQELAKAL EPFITSASSS PYHRYSSSPS MSQDSYMPTP  60
SYTSFSTSPL PTPAAATSSS SPFSQLPPLY SSPYAAPGMA GPMGLNQLGP AQTQQIQAQF  120
MFQQQQRGLH AAFLGPRAQP MKQSGSPPLA PAQSKLYRGV RQRHWGKWVA EIRLPKNRTR  180
LWLGTFDTAE DAALAYDKAA FRLRGDMARP NFPGLRRERA QLAGPLHAFG DAKLTGILQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-22152213163ATERF1
3gcc_A3e-22152213163ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.31070.0callus| crown| inflorescence| leaf| meristem| root| seed| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002454259.11e-118ethylene-responsive transcription factor ERF060
TrEMBLC5XYP11e-117C5XYP1_SORBI; Uncharacterized protein
STRINGSb04g027660.11e-117(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.14e-33ERF family protein