PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof011297

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

NAC

Protein Properties

Length: 240aa MW: 27860.3 Da PI: 9.5321

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-33807	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.8	1.8e-52	45	174	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 +ppGfrFhPtdeel+ +yL+kkv+ ++++l +vi+e+d++k+ePwdL++ ++ + ++ewyfFs++dkky+t++r+nrat++g+Wkatg+dk+++ + Sof011297 45 VPPGFRFHPTDEELLYYYLRKKVAYEPIDL-DVIREIDLNKLEPWDLKErcRIGTgPQNEWYFFSHKDKKYPTETRTNRATTAGFWKATGRDKAIFLGNA 143 69**************************.9***********953444443456**********************************999 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 + +gl+ktLvfy grap+g+ktdW+mheyrl Sof011297 144 RRIGLRKTLVFYIGRAPHGKKTDWIMHEYRL 174 ***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-54	35	181	IPR003441	NAC domain
PROSITE profile	PS51005	52.077	45	199	IPR003441	NAC domain
Pfam	PF02365	7.4E-28	46	174	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
XFSCLSPYSS VAFEELSYNQ AKDISEILAG FARKNMHPGG GPLSVPPGFR FHPTDEELLY 60 YYLRKKVAYE PIDLDVIREI DLNKLEPWDL KERCRIGTGP QNEWYFFSHK DKKYPTETRT 120 NRATTAGFWK ATGRDKAIFL GNARRIGLRK TLVFYIGRAP HGKKTDWIMH EYRLDEENVE 180 NQKMDGWGVG FSASRAFTRK ASIPVKWPHW TTNNFNLFLV LFPEASLPQE HKNIPYLIAX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	3e-46	43	187	18	160	NAC domain-containing protein 19
3swm_B	3e-46	43	187	18	160	NAC domain-containing protein 19
3swm_C	3e-46	43	187	18	160	NAC domain-containing protein 19
3swm_D	3e-46	43	187	18	160	NAC domain-containing protein 19
3swp_A	3e-46	43	187	18	160	NAC domain-containing protein 19
3swp_B	3e-46	43	187	18	160	NAC domain-containing protein 19
3swp_C	3e-46	43	187	18	160	NAC domain-containing protein 19
3swp_D	3e-46	43	187	18	160	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.1182	6e-31	stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in leaf blades, developing flowers, embryo and callus. Weakly expressed in roots. {ECO:0000269\|PubMed:10660065}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in stress response. {ECO:0000250\|UniProtKB:Q7F2L3}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021306089.1	1e-111	NAC domain-containing protein 76
Swissprot	Q5Z6B6	1e-100	NAC76_ORYSJ; NAC domain-containing protein 76
TrEMBL	A0A194YJE9	1e-109	A0A194YJE9_SORBI; Uncharacterized protein
STRING	Sb10g020860.1	1e-110	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79580.3	1e-90	NAC family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]