PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof011477
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family MYB
Protein Properties Length: 238aa    MW: 27541.4 Da    PI: 8.2841
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-99345PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.52e-151067148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..........TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg..........kgRtlkqcksrwqkyl 48
                     +g+WT++Ed +lv+ v+++G ++W+ Ia+ +           ++Rt+k+c++rw +yl
        Sof011477 10 KGPWTEQEDMQLVCTVRLFGDRRWDFIAQXLRfeglgnynlgLNRTGKSCRLRWVNYL 67
                     79******************************************************97 PP
2Myb_DNA-binding551.9e-1774118248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      gr++++E+ l++++++++G++ W++Iar+++ gRt++++k++w++++
        Sof011477  74 GRMSPQEERLIIELHARWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 118
                      89*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.041567IPR017930Myb domain
SuperFamilySSF466892.49E-288114IPR009057Homeodomain-like
SMARTSM007171.3E-13969IPR001005SANT/Myb domain
PfamPF002496.4E-151067IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.8E-191174IPR009057Homeodomain-like
CDDcd001671.44E-91267No hitNo description
PROSITE profilePS5129426.17268122IPR017930Myb domain
SMARTSM007171.8E-1672120IPR001005SANT/Myb domain
PfamPF002499.0E-1674117IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-2475121IPR009057Homeodomain-like
CDDcd001678.26E-1275118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MVTVREEMRK GPWTEQEDMQ LVCTVRLFGD RRWDFIAQXL RFEGLGNYNL GLNRTGKSCR  60
LRWVNYLHPG LKHGRMSPQE ERLIIELHAR WGNRWSRIAR RLPGRTDNEI KNYWRTHMRK  120
KAQERKMSMS SPSSSSYSLT YQACLLDTIP VIGMGSGDTH NGGCVTSALE NTQSVMDGYP  180
IDQIWNEIEA PQAPALLGIA EGKEKTCSSI PCHLPIICMW ELQISEVFWK MEDKEIMM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-2871221105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.90650.0seed
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021317161.11e-146myb-related protein MYBAS1
SwissprotQ53NK61e-117MYBA1_ORYSJ; Myb-related protein MYBAS1
TrEMBLA0A1B6PU471e-144A0A1B6PU47_SORBI; Uncharacterized protein
STRINGGRMZM2G048136_P021e-139(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.31e-66myb domain protein 59
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]