PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof011559

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

C3H

Protein Properties

Length: 237aa MW: 25755.4 Da PI: 9.058

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-88397	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19	2.6e-06	113	125	14	26
--TTTTT-SS-SS CS zf-CCCH 14 tCkyGdrCkFaHg 26 CkyG +C+F+H+ Sof011559 113 SCKYGTSCRFSHD 125 7***********6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	9.244	96	127	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.963	140	165	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
XDAWAVRRRH ASTMAATAPA TDPPDALPAV TADAPTPARP TPAELVARAI APVKPAFLRP 60 PPVREAPKEE GGGGAVVKVE KKSKRQLKRE RHQEQKSTSH LCIEVGKSGN VDSCKYGTSC 120 RFSHDINAYL SQKPADLEGT CPFTSLGQLC PYGITCRFLS THKDTLAPQN HPEGNHERNP 180 LSKEIQKLYG RANINFPKAT AQIKLLGLKD GNKXKAKAAN DEYPDETCEL NGDDKTX

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.14952	0.0	callus\| inflorescence\| leaf

Functional Description ? help Back to Top
Source	Description
UniProt	Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001145737.1	1e-136	uncharacterized LOC100279244
Swissprot	Q7XT07	4e-81	DUS3L_ORYSJ; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
TrEMBL	A0A1D6J4J4	1e-136	A0A1D6J4J4_MAIZE; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]
TrEMBL	A0A3L6GF93	1e-136	A0A3L6GF93_MAIZE; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]
STRING	GRMZM2G120740_P03	1e-136	(Zea mays)

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]