PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof011588
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family bHLH
Protein Properties Length: 237aa    MW: 25093.2 Da    PI: 9.8818
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17466733PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.41.3e-13130177355
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                r+h+e+ErrRR+riN  + +Lr+llP+      +K +Ka+ L  + +++k+L+
  Sof011588 130 RSHSEAERRRRQRINGHLVRLRSLLPNT-----TKTDKASLLDXVLDHVKELE 177
                78*************************9.....8****************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.38127176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-15130187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-11130177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.78E-14130179No hitNo description
Gene3DG3DSA:4.10.280.101.7E-14131185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-13133182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
ESPGRATRPS KTDRKLSSRA AMWEGGMGHG SQEATHQLLP WLGAAPFSEP AAVAGLGAAM  60
GAYACGDGVG GLGLGHGGVF GFGFDAVQQQ CAAEGSGKAV VSVLLGSLQA ELGRMTAREM  120
MDAKALAASR SHSEAERRRR QRINGHLVRL RSLLPNTTKT DKASLLDXVL DHVKELERQT  180
SEMMMANTVG GDDRGAAGWT HNRCCRQRPT NCPWTPGQRT LDGRGGAAVC SLIKRQI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.156740.0bud| inflorescence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462365.11e-72transcription factor bHLH30
TrEMBLC5XC822e-71C5XC82_SORBI; Uncharacterized protein
STRINGSb02g024460.14e-72(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.13e-23bHLH family protein