PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof011716
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family NAC
Protein Properties Length: 235aa    MW: 26120.5 Da    PI: 10.2807
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-64020PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM105.37.5e-33151591128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra..........tks 80 
                lp+G++F+Ptd+el+ e+L+ k++ ++      +  +e+i+++d    i++++P++Lp  v+++    +fF++ +++y+tg+rk+r+            +
  Sof011716  15 LPAGVKFDPTDQELL-EHLEGKARPDTrklhplV--DEFIPTIDgengICYTHPERLP-GVSKDGLVRHFFHRPSRAYTTGTRKRRKvhsgdgddggGGE 110
                799************.99****999886664332..233555544445**********.555666688******************85666666655446 PP

        NAM  81 gyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                 +W++tgk+++vl+ +g+  g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Sof011716 111 TRWHKTGKTRPVLC-NGRPRGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 159
                78************.999***********6657999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.62E-397178IPR003441NAC domain
PROSITE profilePS5100532.16415178IPR003441NAC domain
PfamPF023659.4E-1516159IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
XGRQESTTIQ DLPGLPAGVK FDPTDQELLE HLEGKARPDT RKLHPLVDEF IPTIDGENGI  60
CYTHPERLPG VSKDGLVRHF FHRPSRAYTT GTRKRRKVHS GDGDDGGGGE TRWHKTGKTR  120
PVLCNGRPRG YKKILVLYTN YGKQRKPEKT NWVMHQYHLG SDEEERDGEL VVSKVFFQTQ  180
PKQCGSTMAQ GGRRRRRHRA AGKHLAAGHH QGGGGGGGGX LRDANGGVDQ FYSPX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-111415914140Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in protoxylem and elongating interfascicular fiber cells of elongating internodes, developing metaxylem cells and interfascicular fibers of non-elongating internodes and developing secondary xylem of roots. {ECO:0000269|PubMed:18952777}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002440245.11e-130NAC domain-containing protein 73
SwissprotO494591e-108NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A3L6E8571e-131A0A3L6E857_MAIZE; NAC domain-containing protein 73
STRINGSb09g028430.11e-130(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-107NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]