PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof011726
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family C2H2
Protein Properties Length: 235aa    MW: 23969.9 Da    PI: 7.1295
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-80487PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.92.2e-07185206223
                EETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                 C++Cgk F+r  nL+ H+r H
  Sof011726 185 FCEICGKGFRRDANLRMHMRAH 206
                6*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.39E-6181206No hitNo description
SMARTSM003550.0017184206IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.4E-6184206IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.676184206IPR007087Zinc finger, C2H2
PROSITE patternPS000280186206IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MDSTRRNQVA GRRSSSTIAS RAAATAPPLL TMPGGELADA IMGGVGGGGG GATDGDPRAA  60
LLRLAALGDR MAAVRGRISA YMSGEARPLS YADIQSVSSE ISSAAQLVVL NAAELLACSV  120
PFPAPPPPSA APSPAPAPAP VREIPAVAAA SAQEQQPLEA ARGDGGGYEI VELDAAELLA  180
EHVHFCEICG KGFRRDANLR MHMRAHGDRF KTLDALSRPG HGHGGXAAKP PVAER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.32081e-150bud| callus| inflorescence| meristem| root| seed| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002454046.18e-98uncharacterized protein LOC8068935
RefseqXP_021314916.18e-98uncharacterized protein LOC8068935
TrEMBLA0A3L6EPG45e-89A0A3L6EPG4_MAIZE; Zinc finger protein STOP1
STRINGSb04g023670.13e-97(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.14e-23C2H2 family protein