PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof011826

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

NAC

Protein Properties

Length: 234aa MW: 26050.9 Da PI: 9.8622

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-72023	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	171.1	3.5e-53	16	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 lppGfrFhPtdeel+++yL++k+++ ++ +++ +d++k+ePwdLp +++ +ekewyfF+ +d+ky+tg r+nrat+sgyWkatgkd+++++ +++lv Sof011826 16 LPPGFRFHPTDEELITHYLARKAADPRFAP-RAVGVADLNKCEPWDLPYRATMGEKEWYFFCVKDRKYPTGLRTNRATESGYWKATGKDRDIFR-GKALV 113 79***********************888.789999*******9888999***********************************.99* PP NAM 101 glkktLvfykgrapkgektdWvmheyrl 128 glkktLvfy+grap+g kt Wvmheyrl Sof011826 114 GLKKTLVFYTGRAPRGGKTGWVMHEYRL 141 **************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.02E-64	8	178	IPR003441	NAC domain
PROSITE profile	PS51005	57.55	16	178	IPR003441	NAC domain
Pfam	PF02365	1.7E-29	17	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MEHDVHHHQQ QVAMELPPGF RFHPTDEELI THYLARKAAD PRFAPRAVGV ADLNKCEPWD 60 LPYRATMGEK EWYFFCVKDR KYPTGLRTNR ATESGYWKAT GKDRDIFRGK ALVGLKKTLV 120 FYTGRAPRGG KTGWVMHEYR LHGKHAAAAA SSSSLIPSAS VRAGASKDDW VLCRVFKKSI 180 EPPSVAGSKR SSSVACMGME DVVGPSMSMV DDFAACALPP LMDVVRGSRR HMSL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-56	12	179	13	166	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-56	12	179	13	166	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-56	12	179	13	166	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-56	12	179	13	166	NO APICAL MERISTEM PROTEIN
3swm_A	6e-56	14	179	18	169	NAC domain-containing protein 19
3swm_B	6e-56	14	179	18	169	NAC domain-containing protein 19
3swm_C	6e-56	14	179	18	169	NAC domain-containing protein 19
3swm_D	6e-56	14	179	18	169	NAC domain-containing protein 19
3swp_A	6e-56	14	179	18	169	NAC domain-containing protein 19
3swp_B	6e-56	14	179	18	169	NAC domain-containing protein 19
3swp_C	6e-56	14	179	18	169	NAC domain-containing protein 19
3swp_D	6e-56	14	179	18	169	NAC domain-containing protein 19
4dul_A	7e-56	12	179	13	166	NAC domain-containing protein 19
4dul_B	7e-56	12	179	13	166	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.11556	0.0	bud\| root

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002452340.1	1e-139	NAC domain-containing protein 79
Refseq	XP_021314112.1	1e-139	NAC domain-containing protein 79
Swissprot	Q9FLJ2	9e-83	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	C5XVR3	1e-137	C5XVR3_SORBI; Uncharacterized protein
STRING	Sb04g023990.1	1e-138	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	3e-83	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]