PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof011833
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family GRAS
Protein Properties Length: 234aa    MW: 25688.2 Da    PI: 4.864
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-93133733PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS212.72e-65252292208
       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                ++lL++cAea+s+ +  +aq+++++l++ ++ +gdp qR+aay++e+Laa +++s++++y+al+++e++   +  +l+a+++++e++P++++++++aN a
  Sof011833  25 KQLLFDCAEAISECSIDEAQSIITELRQKVAIQGDPSQRIAAYLVEGLAAAIQSSGKGIYRALRCKEAP---TLYQLSAMQILFEICPCFRLGFMAANYA 121
                589*****************************************************************9...89999*********************** PP

       GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199
                Ilea +gee vHiiDfdi+qG Q+++L+q L + +++p  lRiTgv++pes+      l+ +g+rL+k+Ae ++vpfef++ va ++ed+++ +L+++pg
  Sof011833 122 ILEACKGEEVVHIIDFDINQGSQYITLIQFLRNHSNKPRLLRITGVDDPESVhrAVGGLKVVGQRLEKLAEDCEVPFEFRA-VAANTEDVTPGMLECRPG 220
                **************************************************99888899***********************.799*************** PP

       GRAS 200 EalaVnlvl 208
                Eal+Vnl++
  Sof011833 221 EALIVNLHF 229
                ******987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098534.961234IPR005202Transcription factor GRAS
PfamPF035146.9E-6325229IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
XPKESSPESS LCCLDSNIGE ARHPKQLLFD CAEAISECSI DEAQSIITEL RQKVAIQGDP  60
SQRIAAYLVE GLAAAIQSSG KGIYRALRCK EAPTLYQLSA MQILFEICPC FRLGFMAANY  120
AILEACKGEE VVHIIDFDIN QGSQYITLIQ FLRNHSNKPR LLRITGVDDP ESVHRAVGGL  180
KVVGQRLEKL AEDCEVPFEF RAVAANTEDV TPGMLECRPG EALIVNLHFC CTPG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-273122726219Protein SCARECROW
5b3h_A2e-273122725218Protein SCARECROW
5b3h_D2e-273122725218Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.180010.0callus| crown| leaf| meristem| root| seed| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002439827.11e-152scarecrow-like protein 1
SwissprotQ9SDQ38e-88SCL1_ARATH; Scarecrow-like protein 1
TrEMBLC5YY781e-151C5YY78_SORBI; Uncharacterized protein
STRINGSb09g020850.11e-152(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.14e-90SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]