PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof011892

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

bHLH

Protein Properties

Length: 233aa MW: 24372.1 Da PI: 5.9494

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-29551	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.8	4.6e-14	113	159	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h+e+ErrRR+riN +++Lr+llP+ +K +Ka+ L ++ +++k+L Sof011892 113 RSHSEAERRRRQRINGHLARLRSLLPNT-----TKTDKASLLAEVLDHVKEL 159 78***********************9.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.628	110	159	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-11	113	159	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.49E-15	113	162	No hit	No description
SuperFamily	SSF47459	5.76E-15	113	168	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.4E-15	114	167	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.5E-13	116	165	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MWEGGIEHGS QEATHQLLPW LGAAPFSEPA AVAGLGAAMG AYACGDGVGE LGLGHGGVFG 60 FGFDAVQQQQ QQQRAAEGSG KAVVSGLLGS LQAELGRMTA REMMDAKALA ASRSHSEAER 120 RRRQRINGHL ARLRSLLPNT TKTDKASLLA EVLDHVKELK RQTSAMMMAT TVGGDDGGAA 180 XRAQQQLLPT EADELSVDAG ADGAGRLVVR ASLCCEDRPD LIPDIVRALA ALX

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.15674	0.0	bud\| inflorescence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002462365.1	1e-116	transcription factor bHLH30
Swissprot	Q9S7Y1	7e-50	BH030_ARATH; Transcription factor bHLH30
TrEMBL	C5XC82	1e-114	C5XC82_SORBI; Uncharacterized protein
STRING	Sb02g024460.1	1e-115	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	1e-43	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]