PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof011907

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

GRAS

Protein Properties

Length: 233aa MW: 24764.2 Da PI: 7.0315

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-47800	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	163	2.4e-50	12	210	103	299
GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198 +eav +H++Dfd+s Q +aL+q La+R+ + sl++T+v +p+s ++ +l ++ erL+k+Ae+ gv+ +fnv v+ r ++l+ ++L ++p Sof011907 12 VEAVGDPPPIHVVDFDVSL-SQHAALIQYLADRRVQGRSLKVTAVTDPSSPfsqsQTASLPTVVERLKKLAERAGVEYRFNV-VSCRAAELDASRLCCEP 109 578888889******98.69*********************998889889999******************9.7999********* PP GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298 gEa+aVnl+++l +++desvs +++rde+L+ v+ l P+vv++veqe+++n++++++rf++a+ +y a+++sl+a+l+re+ e++ ++ l+++++n+v Sof011907 110 GEAVAVNLAFALSHVPDESVSPANPRDELLRRVRALGPQVVTLVEQELNTNTAPLAARFTDACAHYGAILESLDATLGRETAEKARAPEAALAKKASNAV 209 *****************************************************************************9999999999***9998 PP GRAS 299 a 299 Sof011907 210 V 210 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	27.453	1	233	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.5E-48	12	210	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
GVALHAAWVP MVEAVGDPPP IHVVDFDVSL SQHAALIQYL ADRRVQGRSL KVTAVTDPSS 60 PFSQSQTASL PTVVERLKKL AERAGVEYRF NVVSCRAAEL DASRLCCEPG EAVAVNLAFA 120 LSHVPDESVS PANPRDELLR RVRALGPQVV TLVEQELNTN TAPLAARFTD ACAHYGAILE 180 SLDATLGRET AEKARAPEAA LAKKASNAVV GMAPNGWNGA RSLQVARQVR MGG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-24	11	209	101	296	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.14625	1e-113	bud\| callus\| inflorescence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008668998.1	1e-121	scarecrow-like protein 8
Refseq	XP_020401436.1	1e-121	scarecrow-like protein 8
TrEMBL	A0A060CY61	1e-120	A0A060CY61_MAIZE; GRAS transcription factor (Fragment)
TrEMBL	A0A3L6G7I1	1e-120	A0A3L6G7I1_MAIZE; Scarecrow-like protein 8
TrEMBL	B4FTE3	1e-123	B4FTE3_MAIZE; Uncharacterized protein
TrEMBL	C4IZS7	1e-121	C4IZS7_MAIZE; Uncharacterized protein
TrEMBL	K7UKW8	1e-120	K7UKW8_MAIZE; Uncharacterized protein
STRING	GRMZM2G109869_P01	1e-121	(Zea mays)
STRING	GRMZM2G173429_P01	1e-121	(Zea mays)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21450.1	2e-41	SCARECROW-like 1