PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof012163
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family GRAS
Protein Properties Length: 231aa    MW: 25957.1 Da    PI: 7.3458
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17421947PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS188.16.1e-582222106323
       GRAS 106 vegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEala 203
                v+g +++Hi+ +++++G+++p L++ La R++gpp++R+T+++ p++g   ++++eetg+rL++fA+e+gvpf+f+  +a ++e++  ++L+++p+E+l+
  Sof012163   2 VAGRSKLHIVEYGVQHGFHYPGLFHLLARREGGPPEVRVTAIAVPQPGfrPAHQIEETGHRLSNFAREMGVPFKFRG-IAAKWEAVCAKDLNIDPDEVLV 100
                678899*****************************************9*9***************************.799******************* PP

       GRAS 204 Vnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301
                Vn+   + +l+desv ++s  +rd+vL+ +++++P+v++++  +  ++++ Fl+rf eal  +sa fd+++a++pr++ er  + r l+g  + nv ac 
  Sof012163 101 VNSECYIGNLMDESVLVDSpsPRDTVLNNIREMRPNVFIHTIVNGTYGAPFFLTRFREALFLFSAQFDMIHATIPRDNAERLLIQRNLFGSLALNVMACD 200
                **************98877779****************************************************************************** PP

       GRAS 302 gaerrerhetlekWrerleeaG 323
                g++ +er e++++W  + ++ G
  Sof012163 201 GSHMVERPENYKQWAVQTTRPG 222
                **************98877766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.0641231IPR005202Transcription factor GRAS
PfamPF035142.1E-552222IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
XVAGRSKLHI VEYGVQHGFH YPGLFHLLAR REGGPPEVRV TAIAVPQPGF RPAHQIEETG  60
HRLSNFAREM GVPFKFRGIA AKWEAVCAKD LNIDPDEVLV VNSECYIGNL MDESVLVDSP  120
SPRDTVLNNI REMRPNVFIH TIVNGTYGAP FFLTRFREAL FLFSAQFDMI HATIPRDNAE  180
RLLIQRNLFG SLALNVMACD GSHMVERPEN YKQWAVQTTR PGSSSSHLNP X
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B6e-232222140366Protein SHORT-ROOT
5b3h_E6e-232222140366Protein SHORT-ROOT
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.123010.0inflorescence| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in cotyledons, leaves and flowers, and in the elongation zone in root. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021308723.11e-142scarecrow-like protein 34
SwissprotO809332e-72SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A1B6QE641e-140A0A1B6QE64_SORBI; Uncharacterized protein
STRINGGRMZM2G163427_P011e-140(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-74GRAS family protein