PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof012282
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family MYB
Protein Properties Length: 230aa    MW: 25236.6 Da    PI: 5.2134
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17468128PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding301.2e-0967111244
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 
                      g+WT eE + + +a ++  ++   +W+++a++++ gRt+ ++  ++
        Sof012282  67 GAWTVEENKMFERALARVDSDapdRWERVAQMLP-GRTAADVAAHY 111
                      89********************************.********999 PP
2Myb_DNA-binding22.33.1e-07183209329
                      SS-HHHHHHHHHHHHHTTTT-HHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIar 29 
                      +WT+eE++l++++  ++G + W + ++
        Sof012282 183 PWTEEEHKLFLRGLXKYGCREWGKLSA 209
                      7*********************88775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.0561115IPR017877Myb-like domain
SMARTSM007171.7E-765117IPR001005SANT/Myb domain
PfamPF002491.1E-867111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-667112IPR009057Homeodomain-like
SuperFamilySSF466891.72E-1067119IPR009057Homeodomain-like
CDDcd001675.05E-768111No hitNo description
PROSITE profilePS500905.448176215IPR017877Myb-like domain
SMARTSM0071755180217IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-5181210IPR009057Homeodomain-like
CDDcd001671.09E-4183211No hitNo description
SuperFamilySSF466892.66E-5183210IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
XFRSVSSDSD RERRGEILGR FVSGAGVVEV RTLMTELWME VLPPPYFAGQ AAGGGRFLPP  60
DRRAGPGAWT VEENKMFERA LARVDSDAPD RWERVAQMLP GRTAADVAAH YDDLESDVGF  120
IEAGFVPFPH YGGGASQSAG FTFEWDGGGV GDAGALGFKR SCYVGGGGKR ERRPDQERQK  180
GIPWTEEEHK LFLRGLXKYG CREWGKLSAQ ILEEPDADQG AAPRKNIYSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A9e-18691311173RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.72100.0bud| callus| crown| inflorescence| leaf| meristem| seed| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002441197.13e-93transcription factor DIVARICATA
SwissprotQ8S9H73e-39DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLC5YYV46e-92C5YYV4_SORBI; Uncharacterized protein
STRINGSb09g022060.11e-92(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.19e-39Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]