PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof012297
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family C2H2
Protein Properties Length: 229aa    MW: 25533.7 Da    PI: 6.4425
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-123802PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.000183054123
               EEET..TTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
               + Cp   Cgk+F++   L  H ++H
  Sof012297 30 HICPfpACGKRFTSDFKLAAHVKSH 54
               6799999****************99 PP
2zf-C2H217.51.2e-0593118123
                EEET..TTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                ++Cp   C+k + +++ L+ H++t H
  Sof012297  93 FVCPyeGCDKAYIHSYKLNLHLKTqH 118
                89*********************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.35E-81555No hitNo description
Gene3DG3DSA:3.30.160.603.3E-101655IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0173054IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.7233054IPR007087Zinc finger, C2H2
PROSITE patternPS0002803254IPR007087Zinc finger, C2H2
SuperFamilySSF576679.29E-786118No hitNo description
Gene3DG3DSA:3.30.160.602.6E-1089118IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.66393126IPR007087Zinc finger, C2H2
SMARTSM003550.006493118IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028095118IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
XTNSCFEFQA FSLDFNLRSH LKTHALENYH ICPFPACGKR FTSDFKLAAH VKSHEKIGTP  60
IAVQHAPAPA AEKPRVAPKP STPATTSYAD RPFVCPYEGC DKAYIHSYKL NLHLKTQHPE  120
HGQEENGKVG ASAGQHAANE QTYQYNYAEV GEIAPNPKRS KHKVHSSKAY NAKISRAMPS  180
DITGVRNQWP GKATYQDDSE ETEEDGGNNI EDGWRYGNND DDEETPDEN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002439119.11e-149zinc finger transcription factor YY1
TrEMBLC5YY371e-148C5YY37_SORBI; Uncharacterized protein
STRINGSb09g000820.11e-148(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.34e-40C2H2 family protein