PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof012361
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family ARR-B
Protein Properties Length: 229aa    MW: 25554.2 Da    PI: 7.5053
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17295422PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like90.61.3e-28145198155
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                kpr++W+ eLH++Fv av+qL G++kA+Pk+il+lm+v+ +t+e+v+SHLQkYRl
  Sof012361 145 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKKILDLMNVENITRENVASHLQKYRL 198
                79*******************.********************************8 PP
2Response_reg55.33.7e-1927040109
                   HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
  Response_reg  40 kekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                   k+ ++Dl++ D+ mp+mdG++ll+     e++lp+i+++a+ge +++ + +  Ga d+l Kp+ +e+l++
     Sof012361   2 KKDQFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGETQTVMKGITHGACDYLLKPVRIEQLRT 70 
                   5778*******************87754.558************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011029.928176IPR001789Signal transduction response regulator, receiver domain
PIRSFPIRSF0363922.5E-1281227IPR017053Response regulator B-type, plant
CDDcd001561.24E-19275No hitNo description
Gene3DG3DSA:3.40.50.23006.1E-28297No hitNo description
PfamPF000723.5E-16271IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521722.7E-23380IPR011006CheY-like superfamily
SuperFamilySSF466891.2E-20142202IPR009057Homeodomain-like
PROSITE profilePS5129411.34142201IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-30143203IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-25145198IPR006447Myb domain, plants
PfamPF002495.1E-7147197IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
XKKDQFDLVI SDVHMPDMDG FKLLELVGLE MDLPVIMLSA NGETQTVMKG ITHGACDYLL  60
KPVRIEQLRT IWQHVVRRRS CDAKNNGNDN DDSGKKLQVV SAEGDNGGGN RNKRTSRKGR  120
DDNGDDGDDS DENSNENGDS STQKKPRVVW SVELHRKFVA AVNQLGIDKA VPKKILDLMN  180
VENITRENVA SHLQKYRLYL KRLSADANRX ANLTAGFGGK NPCLCQPWD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-26141204164ARR10-B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.180790.0bud| callus| crown| inflorescence| leaf| root| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002453411.11e-140two-component response regulator ORR24
SwissprotA2X1N21e-137ORR24_ORYSI; Two-component response regulator ORR24
TrEMBLC5XWW51e-139C5XWW5_SORBI; Two-component response regulator
STRINGSb04g005580.11e-140(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.15e-76response regulator 12