PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof012427

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

MYB_related

Protein Properties

Length: 228aa MW: 24953.1 Da PI: 7.4691

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-78510	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	36.8	9.1e-12	43	95	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwqkyl 48 W t E++ll++av+++G+ +W+++a +++ +g+t+ +c++r++ ++ Sof012427 43 WGTLEELLLACAVTRHGTASWDSVAMEVQtrspvaarLGLTPHSCRLRFRHLR 95 9999*********************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0014	39	97	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.04E-5	40	97	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.8E-4	42	94	IPR009057	Homeodomain-like
Pfam	PF00249	1.6E-9	43	94	IPR001005	SANT/Myb domain
CDD	cd00167	2.58E-4	43	77	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
XLRPHLHCLT GENAGRMADG SDGTDVSPES ETTAAAVKGG EIWGTLEELL LACAVTRHGT 60 ASWDSVAMEV QTRSPVAARL GLTPHSCRLR FRHLRRRFST VGSGGEEAEA EAEAEEDPDA 120 SAAEGWVDEL RRLRVAELRR DVERCDLSIG SLQAKVKRLK EERERERERE RNVSCEAKPD 180 EVSVNDRLSS PTRSPGGRAG KXNFTDLNPP KPPGTRAAAA GPKRKRLX

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.18470	0.0	bud\| inflorescence\| leaf\| meristem\| root\| stem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002462574.2	1e-100	uncharacterized protein LOC8055879
TrEMBL	C5X3Y2	8e-88	C5X3Y2_SORBI; Uncharacterized protein
STRING	Sb02g028460.1	1e-88	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60110.1	1e-10	DNA-binding bromodomain-containing protein