PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof012471
Common NameMYBAS1
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family MYB
Protein Properties Length: 228aa    MW: 26353.2 Da    PI: 9.2476
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S51841446PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.74.7e-171057148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed +lv+ v+++G ++W+ Ia+  g++Rt+k+c++rw +yl
        Sof012471 10 KGPWTKQEDMQLVCTVRLFGDRRWDFIAQVSGLNRTGKSCRLRWVNYL 57
                     79********************************************97 PP
2Myb_DNA-binding55.11.7e-1764108248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      gr++++E+ l++++++++G++ W++Iar+++ gRt++++k++w++++
        Sof012471  64 GRMSPQEERLIIELHARWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 108
                      89*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.485557IPR017930Myb domain
SuperFamilySSF466891.76E-298104IPR009057Homeodomain-like
SMARTSM007171.3E-14959IPR001005SANT/Myb domain
PfamPF002498.4E-161057IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.5E-201164IPR009057Homeodomain-like
CDDcd001671.58E-101257No hitNo description
PROSITE profilePS5129426.17258112IPR017930Myb domain
SMARTSM007171.8E-1662110IPR001005SANT/Myb domain
PfamPF002498.4E-1664107IPR001005SANT/Myb domain
CDDcd001677.00E-1265108No hitNo description
Gene3DG3DSA:1.10.10.606.7E-2465111IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MVTVREEMRK GPWTKQEDMQ LVCTVRLFGD RRWDFIAQVS GLNRTGKSCR LRWVNYLHPG  60
LKHGRMSPQE ERLIIELHAR WGNRWSRIAR RLPGRTDNEI KNYWRTHMRK KAQERKMSLS  120
SPSSSSSSLT YQACLLDTVR VIGMGSGDTH NGSCVTSALE NTQSAMDGYP MDQIWKEIEA  180
PQAPSLLGIA EGKEKTCSSI PCHLPSPAMW DYKYPEVFWK MEDQEIMM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A9e-2971121105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.90650.0seed
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021317161.11e-156myb-related protein MYBAS1
SwissprotQ53NK61e-126MYBA1_ORYSJ; Myb-related protein MYBAS1
TrEMBLC3S3G11e-170C3S3G1_SACOF; MYB transcription factor MYBAS1
TrEMBLF2W4031e-170F2W403_9POAL; MYB transcription factor variant 1
STRINGGRMZM2G048136_P021e-151(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.32e-71myb domain protein 59
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]