PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof012503

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

Protein Properties

Length: 227aa MW: 25563.2 Da PI: 8.2265

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-40694	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	49.6	7.1e-16	129	219	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 f++ +++s+v++ +l lp f+ +h k ++ t+tl de+ + + + k+ + l++GWkeF+ +++L +gD +vF+l+++++f +v ++r+ Sof012503 129 FIQPMIQSHVTRGFWLGLPTYFCPKHLPK--SDETITLVDEEDDESDTLY--LAKKAG--LSTGWKEFAIEHKLHDGDCLVFQLIEQTKF--KVYIIRA 219 8899********************433..5569*9999888888..444433..9*********************987777..9999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	2.55E-21	123	219	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.9E-19	124	220	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.86E-23	127	218	No hit	No description
SMART	SM01019	1.4E-15	129	220	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.8E-13	129	219	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.561	129	220	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MAEAVAVPVA VAYEEQRQRQ IEANKRKLEE LQLHRLSAAV KEAAAAAKPS SAKKGKARVP 60 RDGAAAGAEP LRRSGRLADL PEKPVYHHVR VRKLPKYNAR VPLDAAERSY DISKAEELVQ 120 DLGSSFPIFI QPMIQSHVTR GFWLGLPTYF CPKHLPKSDE TITLVDEEDD ESDTLYLAKK 180 AGLSTGWKEF AIEHKLHDGD CLVFQLIEQT KFKVYIIRAT LYFESEH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002448540.1	1e-130	B3 domain-containing protein Os06g0194400
Swissprot	Q69V36	2e-86	Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBL	A0A1Z5RF03	1e-128	A0A1Z5RF03_SORBI; Uncharacterized protein
STRING	Sb06g028730.1	1e-129	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	7e-43	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]