PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof012504
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family GeBP
Protein Properties Length: 227aa    MW: 25009.7 Da    PI: 8.4536
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-41PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57334.65.1e-1178170397
     DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                +qr w ++Dei+lL ++ + ++k+g  ps d        + + + + s +q+ +++r L+ ++ +   + k+g  +   k+ d  i+ lsk iW 
  Sof012504  78 PQRSWPDSDEIALLEAVASHRQKHGRLPSPDDLVAALRGRLRAEDRLSAEQVAKRLRALRSRYDNAAIRLKRG--IIPPKDGDVTIYRLSKLIWA 170
                79***********************9998865444444455556679********************996655..5678999************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.9E-1679169IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
XKTSPPPPQM ASVERPSPAP SDDTTTTVSD EHLSLPSSPS TTFDSAPESD VSAASSLFSD  60
GSSGPDPEPI VSRKPRPPQR SWPDSDEIAL LEAVASHRQK HGRLPSPDDL VAALRGRLRA  120
EDRLSAEQVA KRLRALRSRY DNAAIRLKRG IIPPKDGDVT IYRLSKLIWA DTRTGKREKK  180
NRAPDAREDP RGFDELTELY PCLFAEAEAI DAEFGYRALK KGVGRIW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002466354.11e-114uncharacterized protein LOC8084155
TrEMBLC5WZ211e-113C5WZ21_SORBI; Uncharacterized protein
STRINGSb01g006270.11e-113(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.11e-07DNA-binding storekeeper protein-related transcriptional regulator