PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof012576

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

Trihelix

Protein Properties

Length: 227aa MW: 23512.1 Da PI: 11.2087

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Sof#S17447579	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	74.2	2.2e-23	29	118	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +Wt++e+laLiea+r+++e++r+g+l++++W++v++ + + ++s +qC++k+e+l+kry++++ ++ +r+++ ++p+f l+ Sof012576 29 CWTHEETLALIEAYRDRWEAVRKGNLRAADWDAVANTVtarcgrFPTATHKSGVQCRHKIEKLRKRYRAERSRSAGRSKG--PKWPFFPLLH 118 8***********************************99998888899**********************98443..47**9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.7E-22	28	119	No hit	No description
PROSITE profile	PS50090	6.098	30	92	IPR017877	Myb-like domain
SMART	SM00595	4.7E-4	37	121	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
SRAAAAAASS GGGIGLGGGG SGRRLPPPCW THEETLALIE AYRDRWEAVR KGNLRAADWD 60 AVANTVTARC GRFPTATHKS GVQCRHKIEK LRKRYRAERS RSAGRSKGPK WPFFPLLHDL 120 AGGGVPDPSP NAIVKIKTKG PAPPASPPSP VSSPSSSEEA VRSXSLHGLI SNXAGPGSGL 180 ALQPSPKGLP GNEAPPAGGK LVESPEKGAG RAGKGTERPK GKKGQWV

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.19023	0.0	leaf\| meristem\| seed\| stem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002467473.1	5e-90	trihelix transcription factor ASIL1
TrEMBL	C5WRH0	1e-88	C5WRH0_SORBI; Uncharacterized protein
STRING	Pavir.Ia02237.1.p	3e-92	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	3e-25	Trihelix family protein