PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof012577

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

BES1

Protein Properties

Length: 227aa MW: 24182.6 Da PI: 9.9144

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Sof#S17448387	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	202.2	1.6e-62	13	161	2	148
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl..eeaeaagssasaspesslqsslk 99 g++r pt ErEnn+rRERrRRaiaaki+aGLRa+Gny lpk++DnneVlkALc+eAGw+ve+DGttyrkg+kpl e+++ +g+sas sp+ss+q Sof012577 13 GGTRVPTYMERENNRRRERRRRAIAAKIFAGLRAYGNYSLPKHCDNNEVLKALCNEAGWTVEPDGTTYRKGCKPLatERPDPIGRSASPSPCSSYQ---- 108 789**********************************************************************999**************.... PP DUF822 100 ssalaspvesysaspksssfpspssldsislasa........asllpvlsvlslvss 148 +sp++sy++sp+sssfps+ s+++i+l + +sl+p+l++ls++ss Sof012577 109 ----PSPRASYNPSPASSSFPSSGSSSHITLGGNnfmggvegNSLIPWLKNLSSSSS 161 ....*********************999889**************998655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	9.0E-68	13	157	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MTSGAGGAAA GIGGTRVPTY MERENNRRRE RRRRAIAAKI FAGLRAYGNY SLPKHCDNNE 60 VLKALCNEAG WTVEPDGTTY RKGCKPLATE RPDPIGRSAS PSPCSSYQPS PRASYNPSPA 120 SSSFPSSGSS SHITLGGNNF MGGVEGNSLI PWLKNLSSSS SFASSSKXPQ LHHLYFNGGS 180 ISAPGTPSXS SPTRTPXIKT DWENPNGQPP WGCAKYAXXP TPTAEPW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	4e-24	35	87	391	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	4e-24	35	87	391	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	4e-24	35	87	391	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	4e-24	35	87	391	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.11195	0.0	crown\| inflorescence\| meristem\| root\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	May function in brassinosteroid signaling. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002437132.1	1e-103	protein BZR1 homolog 3
Swissprot	Q5Z9E5	1e-93	BZR3_ORYSJ; Protein BZR1 homolog 3
TrEMBL	C5Z4I1	1e-102	C5Z4I1_SORBI; Uncharacterized protein
STRING	Sb10g021750.1	1e-102	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75080.2	4e-26	BES1 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]