PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof012582

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

CAMTA

Protein Properties

Length: 227aa MW: 25968.8 Da PI: 7.889

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Sof#S53267655	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	174.6	1.4e-54	18	135	2	118
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcyw 100 lke ++rwl++ ei++iL+n+++++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kk+dgktv+E+he+LK g+v+vl+ yYah+e +++fqrr+yw Sof012582 18 LKEaQHRWLRPAEICEILKNYRNFRISPEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKRDGKTVKEAHERLKSGSVDVLHRYYAHGEGKENFQRRSYW 117 45559********************************************************************************************* PP CG-1 101 lLeeelekivlvhylevk 118 +Lee++ +ivlvhylevk Sof012582 118 MLEEDFMHIVLVHYLEVK 135 *************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	80.678	14	140	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.2E-75	17	135	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.3E-48	20	134	IPR005559	CG-1 DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
XEARRHAIAP QLDVEQILKE AQHRWLRPAE ICEILKNYRN FRISPEPPNR PPSGSLFLFD 60 RKVLRYFRKD GHNWRKKRDG KTVKEAHERL KSGSVDVLHR YYAHGEGKEN FQRRSYWMLE 120 EDFMHIVLVH YLEVKGGKST SRIRGHDDML QAARMDSPLS QLPSQTTEGE SSLSGQASEY 180 EETESDIYSG GAGYHPVSWM QQHENGGGPV MGASTPSSYI PALSLDA

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.22499	0.0	bud

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, old leaves, petals, sepals, top of carpels, stigmas, stamen filaments, anthers and siliques, but not in pollen. {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:14581622}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:23581962, ECO:0000269\|PubMed:25039701, ECO:0000269\|PubMed:25627216, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:25627216}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021321951.1	1e-154	calmodulin-binding transcription activator 2 isoform X5
Swissprot	Q6NPP4	6e-73	CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBL	A0A368SUT7	1e-146	A0A368SUT7_SETIT; Uncharacterized protein
STRING	GRMZM2G447551_P01	1e-145	(Zea mays)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64220.2	3e-75	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]