PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof012583
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family WRKY
Protein Properties Length: 226aa    MW: 24078.5 Da    PI: 7.7471
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-100313PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY52.41e-16140200158
                ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                +dDg++WrKYGqKe+ g+++ ++      +   gC ++k+v+r++ed ++ +++++geH++
  Sof012583 140 VDDGHSWRKYGQKEILGAKHXKGLLTLHAPplqGCLATKQVQRTDEDATMYDVINTGEHTC 200
                59********************98776665666**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-17127200IPR003657WRKY domain
PROSITE profilePS5081114.952135198IPR003657WRKY domain
SuperFamilySSF1182902.35E-14138200IPR003657WRKY domain
SMARTSM007742.1E-18140202IPR003657WRKY domain
PfamPF031061.2E-17141200IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
QEGHSHHLVA TTEMEMGMGI VDGGSNNGGS SSGLVVTELS HIKELVRQLE VHLGGSPDLC  60
KHLASQIFSL TERSIGLITS SNLDAAARRK RSAGDAGLTS PLSATPTSDV TDGPFKNTKK  120
RKMMEQRRQR VSSAGGENAV DDGHSWRKYG QKEILGAKHX KGLLTLHAPP LQGCLATKQV  180
QRTDEDATMY DVINTGEHTC VNRPXTVGTA AHKPDADAQL QTLSAG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.115900.0bud| crown| leaf| meristem| root| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460069.11e-105probable WRKY transcription factor 54
TrEMBLC5XAG01e-103C5XAG0_SORBI; Uncharacterized protein
STRINGSb02g022290.11e-104(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.14e-18WRKY DNA-binding protein 46