PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof012849
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family B3
Protein Properties Length: 224aa    MW: 25167.1 Da    PI: 9.6162
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-99267PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.94.9e-15142219184
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                f+k++++s+v++  +l lp +f++++     +++ ++lede+g +++  +   +++ +  l++GW++ +  ++L+egD++ F+l
  Sof012849 142 FVKTMVRSHVSSCFWLGLPTSFCKDNLP--SKEFRMVLEDEEGVEFDAVY--IGNRPG--LSGGWRGLAMHHNLEEGDSLFFEL 219
                89*********************99953..35678***************..555434..**********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-16134219IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-20136220IPR015300DNA-binding pseudobarrel domain
CDDcd100171.30E-22140219No hitNo description
PfamPF023626.0E-14142219IPR003340B3 DNA binding domain
SMARTSM010192.2E-9142224IPR003340B3 DNA binding domain
PROSITE profilePS5086311.152142224IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MAAKASSAAA SGAAYEEQRR KRVLENLKHL EDLGIKEMSK SLLQAARLQK QNKAGVCASP  60
KARKKFDATE VRRSSRAKTT VSYKDDFGEL DTFLRGTRRS GGRNTEHGRE YTGRISSYQQ  120
QQHAFRKAEK LQDSLDPNNP SFVKTMVRSH VSSCFWLGLP TSFCKDNLPS KEFRMVLEDE  180
EGVEFDAVYI GNRPGLSGGW RGLAMHHNLE EGDSLFFELP ELGX
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.104480.0callus| crown
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001141031.11e-139uncharacterized protein LOC100273110
SwissprotQ5KQI41e-107Y5814_ORYSJ; B3 domain-containing protein Os05g0481400
TrEMBLB4FSX91e-137B4FSX9_MAIZE; Putative B3 domain-containing protein
STRINGGRMZM2G174610_P011e-138(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.14e-43B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]