PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof012951
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family ERF
Protein Properties Length: 223aa    MW: 24339.9 Da    PI: 8.9288
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-99326PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2513.5e-16127177155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                ++y+GVr ++ +grW+AeIrdp+    + +r +lg++ taeeAa a+++ + +++g
  Sof012951 127 KKYRGVRCRR-SGRWAAEIRDPR----QgRRAWLGTYRTAEEAALAYDREASRIRG 177
                59****9666.8*********94....25**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.05E-25127185No hitNo description
SMARTSM003809.3E-33128191IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-28128185IPR001471AP2/ERF domain
PROSITE profilePS5103221.496128185IPR001471AP2/ERF domain
PfamPF008477.9E-10128177IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-20128186IPR016177DNA-binding domain
PRINTSPR003674.6E-7129140IPR001471AP2/ERF domain
PRINTSPR003674.6E-7151167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
RPRRRAQRND RDDMCGGAIL AELVPARVHR PLTAATLWPA ALSGTTTGGK RKADAAAVTD  60
DDDDYEEFEA EFQLFDDAEF QLLDDQEPSP AAAASLEAGG CNCKRKAAVA PPAGASASTG  120
PTTPRYKKYR GVRCRRSGRW AAEIRDPRQG RRAWLGTYRT AEEAALAYDR EASRIRGKSA  180
RLNFPLIPQE GPSRHAPTPV AIDLNLAAVL RQSERPGSGW DHX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-18127191469ATERF1
3gcc_A4e-18127191469ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.5540.0callus| root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001136511.18e-70uncharacterized protein LOC100216626
TrEMBLA0A3L6SIM64e-71A0A3L6SIM6_PANMI; Ethylene-responsive transcription factor RAP2-12-like
STRINGGRMZM2G129674_P013e-69(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G36060.12e-22ERF family protein