PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof012953
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family GRAS
Protein Properties Length: 223aa    MW: 23291.9 Da    PI: 5.1636
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17258295PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS101.61.2e-31832121133
       GRAS   1 lvelLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                lv+lL++cA av++gd++ a+a La  +    a +  + + R+a +ft AL++rl+   + + +  +p + +    +++++ ++ f+e+ P+lkf+h+ta
  Sof012953  83 LVHLLMSCAGAVEAGDHAGASAHLADAHAAlaAVSPTSGIGRVAVHFTAALSRRLFP--PPTPSPPAPAPPA---GDDHAFQYHRFYEAXPYLKFAHFTA 177
                68***********************99988745555589******************..6666555555555...9999999999*************** PP

       GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLa 133
                NqaIle  +g ++  iiDf+++qGlQWpaL qaLa
  Sof012953 178 NQAILEGRQGWSTFXIIDFSLMQGLQWPALDQALA 212
                **********************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098524.09457223IPR005202Transcription factor GRAS
PfamPF035144.0E-2983212IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MAMGGASFPF QWPEAEPADP GLDGVTLPPL PTAVPDAAGV AAAYYADAAA DMHAMQHMEA  60
LPDLAAALAA IRREEEEAAG IRLVHLLMSC AGAVEAGDHA GASAHLADAH AALAAVSPTS  120
GIGRVAVHFT AALSRRLFPP PTPSPPAPAP PAGDDHAFQY HRFYEAXPYL KFAHFTANQA  180
ILEGRQGWST FXIIDFSLMQ GLQWPALDQA LAPPARRAGC LPP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-16832124132GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.155190.0bud| inflorescence| leaf
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458232.22e-81DELLA protein DWARF8
TrEMBLA0A1E5V2M32e-75A0A1E5V2M3_9POAL; DELLA protein GAI (Fragment)
STRINGPavir.J11985.1.p6e-82(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.17e-25GRAS family protein