PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof012970
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family SBP
Protein Properties Length: 223aa    MW: 24184.5 Da    PI: 5.026
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17398065PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP85.66.3e-27152210159
                --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS- CS
        SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeek 59 
                +CqvegC adl+ ak+yhrrhkvCe+h+ka++++v ++ qrfCqqC rf  l+ef e+k
  Sof012970 152 ACQVEGCGADLTAAKDYHRRHKVCEMHAKASTAVVGNTVQRFCQQCNRFQLLQEFHERK 210
                5*******************************************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.6E-29145210IPR004333Transcription factor, SBP-box
PROSITE profilePS5114121.495150223IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.88E-26151211IPR004333Transcription factor, SBP-box
PfamPF031104.0E-21153210IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MEAARFGTQS SHLYGGGLGE LDLNRRENRV FGWDLNDWSW DSQRFVATPV PAEAANGSGL  60
NSSPSTSEEA EEEMARNGGL RGDTDKRKRV VVIDDDDETE DQDTVVNGGG LLSLRVGGSA  120
VGVGAMEKSD VNEDERNGKK IRVQGGSSSG PACQVEGCGA DLTAAKDYHR RHKVCEMHAK  180
ASTAVVGNTV QRFCQQCNRF QLLQEFHERK AKLPGDAYHA TID
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj0_A2e-24149206259squamosa promoter-binding protein-like 12
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.158840.0inflorescence| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16861571}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002466159.11e-115squamosa promoter-binding-like protein 6
SwissprotQ75LH62e-86SPL6_ORYSJ; Squamosa promoter-binding-like protein 6
TrEMBLC5WU181e-114C5WU18_SORBI; Uncharacterized protein
STRINGSb01g002530.11e-114(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.14e-26squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]