PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof013049
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family C3H
Protein Properties Length: 222aa    MW: 23750.4 Da    PI: 8.2634
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17245028PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.92.2e-101439127
               --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
               +kt+lC+ f++ GtC+y  +C+FaHg+
  Sof013049 14 FKTKLCCKFRA-GTCPYVTNCNFAHGM 39
               69*********.*************95 PP
2zf-CCCH19.12.4e-0692117126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                yk + C+ f+    C+yGd C+F H+
  Sof013049  92 YKGRHCKKFYTEEGCPYGDACTFLHD 117
                78888********************7 PP
3zf-CCCH44.32.9e-14156181126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                +kt++C+ +  tG+C++G++C+FaHg
  Sof013049 156 WKTRICNKWEMTGYCPFGSKCHFAHG 181
                8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.109.6E-151146IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.2E-81144IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.0281340IPR000571Zinc finger, CCCH-type
SMARTSM003560.00141339IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-71439IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-991119IPR000571Zinc finger, CCCH-type
SMARTSM003560.391118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.62991119IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-791119IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-17151185IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-10152186IPR000571Zinc finger, CCCH-type
SMARTSM003567.5E-9155182IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.544155183IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-11156181IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
XSTSKSRAIG KMFFKTKLCC KFRAGTCPYV TNCNFAHGME ELRKPPPNWQ EIVAAHEEAT  60
EQREEHQIPI MTSGSVVAGD GGGGSSQGGR AYKGRHCKKF YTEEGCPYGD ACTFLHDEQS  120
KARESVAISL SPTVGGGGYN AAASANGVMV QKPSNWKTRI CNKWEMTGYC PFGSKCHFAH  180
GSAELHKYGG GLVDIDGRDI ASTPDSKQAG ASAKAPAESG WP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.155790.0bud| leaf| seed
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021321178.11e-140zinc finger CCCH domain-containing protein 56 isoform X2
SwissprotQ84UQ31e-119C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A446YGY51e-140A0A446YGY5_TRITD; Uncharacterized protein
STRINGTraes_7DL_D19D5E59C.11e-137(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-86C3H family protein