PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof013053

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

Trihelix

Protein Properties

Length: 222aa MW: 24574.2 Da PI: 9.7195

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Sof#S17264130	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	54.7	2.6e-17	15	104	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +Wt+ + L++a++++ e+l+rg l++ +We+v++++ ++ +s +qCk+k++nl+kryk + ++ + +++s++p+f++le Sof013053 15 EWTDGASRSLLDAYTDRFEQLNRGHLRGRDWEDVAAVVtdgqGKTTGGKSVEQCKNKIDNLKKRYKVECQRLTSSGGGATSHWPWFKKLE 104 5***********************************7655444446899***********99999999989999******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.3E-20	13	106	No hit	No description
Gene3D	G3DSA:3.40.1160.10	7.5E-5	161	217	IPR001048	Aspartate/glutamate/uridylate kinase

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
XISSVHDLYR KDREEWTDGA SRSLLDAYTD RFEQLNRGHL RGRDWEDVAA VVTDGQGKTT 60 GGKSVEQCKN KIDNLKKRYK VECQRLTSSG GGATSHWPWF KKLEQIVGDS VSPASSKPLA 120 AAEDVKPRQQ QQQHGSKRYP LSSTGPPLGL VALERTLFQI QDGRRVLLKI GGTCLRGAGP 180 XNVDPKVIML IAREVQGACH QRWEGAIRGG GRDIFCGDNW VA

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.9818	0.0	bud\| inflorescence\| leaf\| root\| stem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002446396.1	1e-125	uncharacterized protein LOC8072072
TrEMBL	A0A059Q022	1e-130	A0A059Q022_9POAL; Aspartate/glutamate/uridylate kinase
STRING	Sb06g015280.1	1e-124	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10030.2	3e-65	Trihelix family protein