PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof013168
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family ERF
Protein Properties Length: 221aa    MW: 23564.6 Da    PI: 4.9948
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17274257PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.52.5e-16104154155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                ++y+GVr ++ +grW+AeIrdp+    + +r +lg++ taeeAa a+++ +++++g
  Sof013168 104 KKYRGVRCRR-SGRWAAEIRDPR----QgRRAWLGTYRTAEEAALAYDREARRIRG 154
                59****9666.8*********94....25************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.00E-26104162No hitNo description
PfamPF008471.7E-9105154IPR001471AP2/ERF domain
PROSITE profilePS5103221.628105162IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-28105162IPR001471AP2/ERF domain
SMARTSM003804.4E-33105168IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-21105163IPR016177DNA-binding domain
PRINTSPR003674.5E-7106117IPR001471AP2/ERF domain
PRINTSPR003674.5E-7128144IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
XARVHRPLTA ATLWPAALSG TTTGGKRKAD AAAVTDDDDD DYEEFEAEFQ LFNDAEFQLL  60
DDQEPSPAAA ASLEAGGCTC KRKAAVAPPA GASASTGPTT PRYKKYRGVR CRRSGRWAAE  120
IRDPRQGRRA WLGTYRTAEE AALAYDREAR RIRGKSARLN FPLIPQEGPT PVAIDLNLPP  180
VSDDLDAPAP AGDDDGTTDA DGXAGDAKMA SVSTLLARVK N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-18104168469ATERF1
3gcc_A7e-18104168469ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.5540.0callus| root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001136511.12e-71uncharacterized protein LOC100216626
TrEMBLB4FIY35e-70B4FIY3_MAIZE; AP2-EREBP transcription factor
STRINGGRMZM2G129674_P019e-71(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.11e-22ERF family protein