PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof013248

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

LBD

Protein Properties

Length: 220aa MW: 22769.3 Da PI: 8.8803

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-46070	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	142.1	1.7e-44	29	128	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrrkC ++Cv+apyfp e+p+kfanvhk+FGasnv+kll++l +++reda+ssl+yeAear++dPvyG+vg i+ lq+q+++l++el+++++e Sof013248 29 PCAACKFLRRKCLPGCVFAPYFPPEEPQKFANVHKVFGASNVTKLLNELLPHQREDAVSSLAYEAEARVKDPVYGCVGAISVLQRQVHRLQKELDAAHAE 128 7**********************************************************************************************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.39	28	129	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.4E-44	29	126	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MASPSSTSNN SALSPVAASG TTTPGAGAPC AACKFLRRKC LPGCVFAPYF PPEEPQKFAN 60 VHKVFGASNV TKLLNELLPH QREDAVSSLA YEAEARVKDP VYGCVGAISV LQRQVHRLQK 120 ELDAAHAELL RYACGDVAAG IPTALPVVSA APRLSTAMTT TSPGQFAAAA ATAHAAAGMY 180 GSSRRLRVLD GVAAPAPXPX AGGCYFMRNH SNVISIPPGX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-85	22	150	4	131	LOB family transfactor Ramosa2.1
5ly0_B	4e-85	22	150	4	131	LOB family transfactor Ramosa2.1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.5058	1e-163	crown\| inflorescence

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in a band of cells at the adaxial base of all lateral organs formed from the shoot apical meristem and at the base of lateral roots. {ECO:0000269\|PubMed:12068116}.

Functional Description ? help Back to Top
Source	Description
UniProt	Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269\|PubMed:11934861}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002455115.1	1e-129	LOB domain-containing protein 6
Swissprot	Q9FML4	2e-68	LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBL	A0A0H4NSZ2	1e-128	A0A0H4NSZ2_9POAL; Ramosa 2 protein (Fragment)
TrEMBL	A0A0H4NTW2	1e-128	A0A0H4NTW2_9POAL; Ramosa 2 protein (Fragment)
TrEMBL	A0A0H4NWD7	1e-128	A0A0H4NWD7_9POAL; Ramosa 2 protein (Fragment)
TrEMBL	A0A0H4NWE7	1e-128	A0A0H4NWE7_9POAL; Ramosa 2 protein (Fragment)
TrEMBL	A0A0H4NXQ5	1e-128	A0A0H4NXQ5_9POAL; Ramosa 2 protein (Fragment)
TrEMBL	A0A0H4NXQ9	1e-128	A0A0H4NXQ9_9POAL; Ramosa 2 protein (Fragment)
STRING	Sb03g004590.1	1e-128	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.4	1e-66	LBD family protein

Publications ? help Back to Top
Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138]