PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof013303

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

C2H2

Protein Properties

Length: 220aa MW: 22791.7 Da PI: 10.6453

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Sof#S17322679	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.1	6.8e-05	141	164	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ Cg++ r+ +L+ H+ + H Sof013303 141 FPCKVCGEVLGRPQLLELHQAMkH 164 89******************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	143	164	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
XDIAVDLLPG SVVLAVTSVS VRGAPRRHVS SLATSLRFYI HRIFSSSGSG AKNGGTVAGS 60 REEEEAVATT VSSPLAQSLP HQPSTSVVLS TPSSPCASSP FMSPLSVRSL SATPVPSSSP 120 QKLLQASRQS SRSFAARGDV FPCKVCGEVL GRPQLLELHQ AMKHSLSELT HLDSSLNIIR 180 MIFLAGWKPA AASGARAGEA PAVRPHSQGF TTTPGALGPV

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.16907	0.0	crown\| inflorescence\| stem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021313429.1	1e-101	uncharacterized protein LOC8054291
TrEMBL	C5WQ57	1e-100	C5WQ57_SORBI; Uncharacterized protein
STRING	Sb01g040170.1	1e-101	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29660.1	1e-09	C2H2 family protein