PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof013324

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

MYB_related

Protein Properties

Length: 219aa MW: 24574.1 Da PI: 10.2735

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-1079133734	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.3	2e-14	107	151	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++d+ + lG+g+W+ I++ + ++Rt+ q+ s+ qky Sof013324 107 PWTEEEHRKFLDGLRNLGKGDWRGISKGFVTTRTATQVASHAQKY 151 7*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.368	100	156	IPR017930	Myb domain
SuperFamily	SSF46689	1.22E-17	101	157	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.0E-17	103	155	IPR006447	Myb domain, plants
SMART	SM00717	2.6E-9	104	154	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-10	105	150	IPR009057	Homeodomain-like
CDD	cd00167	2.37E-9	107	152	No hit	No description
Pfam	PF00249	6.5E-12	107	151	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
XDAWARSRGG IEGKGMEEEQ VRETTMTPVV LRLFGVDVRR GDGGEPEELP MDIKKSSSMP 60 NLIIHKPLLS PGDAGDGKGY ASDDAELASG QQKRRRRKAQ ERKKGIPWTE EEHRKFLDGL 120 RNLGKGDWRG ISKGFVTTRT ATQVASHAQK YFLRQNNPGK KKRRASLFDV GIADYNYNDD 180 QVPSPQRSIA TKPAPTQEII HTDRGDVPYR GFGEILRHX

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	92	97	KRRRRK
2	92	103	KRRRRKAQERKK
3	93	103	RRRRKAQERKK
4	159	163	KKKRR

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed mainly in roots, leaves, and senescent leaves at similar levels. {ECO:0000269\|PubMed:12172034}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000269\|PubMed:12172034}.
UniProt	Transcription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000250\|UniProtKB:Q7XC51}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by sucrose. Slightly repressed by gibberellic acid (GA). {ECO:0000269\|PubMed:12172034}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002467479.1	1e-132	transcription factor MYBS2
Swissprot	B8BI93	6e-76	MYBS2_ORYSI; Transcription factor MYBS2
Swissprot	Q7XC51	6e-76	MYBS2_ORYSJ; Transcription factor MYBS2
TrEMBL	A0A059Q0L7	1e-140	A0A059Q0L7_9POAL; Uncharacterized protein
STRING	Sb01g028870.1	1e-131	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47390.1	3e-34	MYB_related family protein

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]