PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof013327

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

CAMTA

Protein Properties

Length: 219aa MW: 25227.2 Da PI: 9.5969

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-117897	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	174.4	1.6e-54	21	133	5	117
CG-1 5 kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLee 104 k+rwlk++e+++iL+n+e ++++++++++p+sgs++L+nr+++ryfr DG++w+kkk+gkt++E+he+LKv++v++l+cyYa++++nptfqrr+yw+L+ Sof013327 21 KTRWLKPQEVLKILQNHELFTISHKTPQKPQSGSWFLFNRRVLRYFRSDGFEWQKKKNGKTINEAHERLKVDNVDALNCYYARGDKNPTFQRRIYWMLDP 120 89************************************************************************************************ PP CG-1 105 elekivlvhylev 117 ++e+ivlvhy++v Sof013327 121 AYEHIVLVHYRDV 133 ********987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	74.404	13	139	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.2E-64	16	134	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	3.5E-49	21	133	IPR005559	CG-1 DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MQQLQQQQQG LDIDKLQQVV KTRWLKPQEV LKILQNHELF TISHKTPQKP QSGSWFLFNR 60 RVLRYFRSDG FEWQKKKNGK TINEAHERLK VDNVDALNCY YARGDKNPTF QRRIYWMLDP 120 AYEHIVLVHY RDVLEGSISV SARNDSSTSN QNGSASRADV HSSPGWTSEL IVQCPNSCSP 180 GSCGXVSFRT SASESDWIQH KAALPKLKMQ LSLEEQGKM

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.9251	0.0	stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269\|PubMed:12218065}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:25039701, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:28351986}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002456865.1	1e-140	calmodulin-binding transcription activator 4
Swissprot	Q9FYG2	5e-53	CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBL	C5XGC6	1e-139	C5XGC6_SORBI; Uncharacterized protein
STRING	Sb03g044220.1	1e-139	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	4e-54	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]