PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof013474
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family ERF
Protein Properties Length: 218aa    MW: 24507.5 Da    PI: 11.5317
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-5672PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.92.1e-17105154255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                +y+G+r ++ +g+W+AeIrdp+    +  r++lg+f tae Aa a+++a ++++g
  Sof013474 105 HYRGIRCRP-WGKWAAEIRDPV----KgVRVWLGTFPTAEAAALAYDHATRNIRG 154
                7*****999.**********75....44*********************999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.6E-31104163IPR001471AP2/ERF domain
PfamPF008472.7E-10105154IPR001471AP2/ERF domain
SMARTSM003801.7E-35105168IPR001471AP2/ERF domain
CDDcd000183.85E-24105164No hitNo description
PROSITE profilePS5103222.932105162IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-21105164IPR016177DNA-binding domain
PRINTSPR003673.3E-10106117IPR001471AP2/ERF domain
PRINTSPR003673.3E-10128144IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
XKERKASRAG QPANQLQQGE RDRAKMCGGA ILVDLNPSTP ARRMEMQRKA DDFEAAFREF  60
DEEDEEMVEW DTKAAPALVF RATKPMVRQV QHQAALSRRR NPARHYRGIR CRPWGKWAAE  120
IRDPVKGVRV WLGTFPTAEA AALAYDHATR NIRGPRAKLN FPASSSSHGA AGARASRKRA  180
RAADAVIDLV EKRNKSNARR WRRQAVLKHE AAERSSGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-22103167368ATERF1
3gcc_A1e-22103167368ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.165350.0crown| meristem| root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797880.12e-48ethylene-responsive transcription factor ERF073-like
TrEMBLA0A2T7CGR11e-47A0A2T7CGR1_9POAL; Uncharacterized protein
STRINGSb01g045040.11e-42(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.13e-27ethylene-responsive element binding protein