PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof013534
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family Trihelix
Protein Properties Length: 218aa    MW: 24970.1 Da    PI: 11.1761
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17447502PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix301.3e-0967158185
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkr...tsessstcpyfdql 85 
                +Wt++ + aL++a  +   r +r+  ++  W ev++ +     r  g+  s  qC+++ + l+k++k+++e+++     + +s s+++y+d++
  Sof013534  67 KWTERSTFALLDAWGDSFIRAGRSIIRADEWLEVARLVcaaadRPAGY-FSDSQCRNRVDTLRKKFKQERERARLAsrrSGPSPSKWVYYDKM 158
                7***********************************999996444444.5999****************9998765212567889******99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.3E-1466160No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
XRVPFAVDLP LPILCFLIRR LPVAFLPATK RRRTDRYALG FEFAPRLAPY ELPEDPLPDK  60
PKRSGPKWTE RSTFALLDAW GDSFIRAGRS IIRADEWLEV ARLVCAAADR PAGYFSDSQC  120
RNRVDTLRKK FKQERERARL ASRRSGPSPS KWVYYDKMVS ILCPSPLLLP XPXPXPXPXX  180
LQLLPLAAXR RRDRQPSRRF QWGMKAPERL LGGGGDVV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.60950.0crown| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458413.23e-97trihelix transcription factor ASIL2
TrEMBLA0A1W0VZ687e-96A0A1W0VZ68_SORBI; Uncharacterized protein
STRINGSb03g033020.11e-95(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.14e-15sequence-specific DNA binding transcription factors