PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof013580
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family NAC
Protein Properties Length: 217aa    MW: 24069.7 Da    PI: 9.7982
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-38144PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM79.86e-25662061128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sgyWkat 86 
                lp+G++F+Ptd+el+ ++L+ k++ +       ++++   i+   +i++++P++Lp  v ++  +    + + k+y+tg+rk+r+++      + +W++t
  Sof013580  66 LPAGVKFDPTDHELL-DHLEGKARPDArklhplIDEFIPtIEGEnGICYTHPERLP-GVGKDGLSGTSSTAHPKAYTTGTRKRRKVHtdeqggETRWHKT 163
                799************.99****998885665443333333665557**********.444444455677889999*********744446555778**** PP

        NAM  87 gkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                gk++ vl+ +g+l+g kk Lv+y   g+++k+ekt  vmh+y+l
  Sof013580 164 GKTRXVLT-NGKLKGYKKNLVLYtnYGKQRKPEKTXLVMHQYHL 206
                ********.999***********6657999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.36E-2658211IPR003441NAC domain
PROSITE profilePS5100523.8166217IPR003441NAC domain
PfamPF023658.0E-1167206IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MTWCNSFNDV RAVENNLATA AAVAAAKKQQ QASSHVNLIR TCPSCGHRAQ YEQVQAAATI  60
QDLPGLPAGV KFDPTDHELL DHLEGKARPD ARKLHPLIDE FIPTIEGENG ICYTHPERLP  120
GVGKDGLSGT SSTAHPKAYT TGTRKRRKVH TDEQGGETRW HKTGKTRXVL TNGKLKGYKK  180
NLVLYTNYGK QRKPEKTXLV MHQYHLGSDK EEKDGKL
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in protoxylem and elongating interfascicular fiber cells of elongating internodes, developing metaxylem cells and interfascicular fibers of non-elongating internodes and developing secondary xylem of roots. {ECO:0000269|PubMed:18952777}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021311090.11e-132NAC domain-containing protein 73
RefseqXP_025814631.11e-132NAC domain-containing protein 73-like isoform X1
SwissprotO494592e-93NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A1B6Q5751e-131A0A1B6Q575_SORBI; Uncharacterized protein
TrEMBLA0A2S3HT271e-131A0A2S3HT27_9POAL; Uncharacterized protein
TrEMBLA0A2T7DIP11e-131A0A2T7DIP1_9POAL; Uncharacterized protein
STRINGSb03g030750.11e-131(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.14e-93NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]