PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof013684

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

C3H

Protein Properties

Length: 216aa MW: 24926.4 Da PI: 8.5825

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-31623	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33.9	5.2e-11	8	33	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C+f+ +t Ck+G++CkF+H Sof013684 8 PGEPECPFYVKTRSCKFGANCKFHHL 33 5799*********************6 PP
2	zf-CCCH	28.8	2e-09	77	103	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ Cr+++++G Ck+ + C F+H++ Sof013684 77 PGQPDCRYYMQFGKCKFESACIFNHPK 103 5789*********************96 PP
3	zf-CCCH	37.4	4.3e-12	112	135	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C+f+++tGtC++G+ C F H++ Sof013684 112 AECPFYMKTGTCQFGSACEFYHPK 135 68********************96 PP
4	zf-CCCH	22.1	2.7e-07	177	200	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C+++++ G+Ck+ +CkF+H++ Sof013684 177 LECPHYMKHGYCKFQMNCKFHHPR 200 58********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.432	7	35	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.013	7	34	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.1E-8	9	33	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.35E-5	11	33	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.3E-4	13	32	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.549	76	104	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.5E-4	76	103	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	8.5E-7	78	103	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	7.33E-5	81	104	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.7E-4	82	104	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.967	108	136	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.4E-5	108	135	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	7.06E-6	110	136	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.2E-9	112	135	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.1E-4	114	135	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.972	173	201	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.16	173	200	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.88E-6	176	203	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.5E-5	177	200	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	7.9E-4	179	201	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
LMVYPDRPGE PECPFYVKTR SCKFGANCKF HHLKDITPSM QGPASPKRSV PANEHHPAAR 60 TILQDQMYQQ QKYPERPGQP DCRYYMQFGK CKFESACIFN HPKELSSGWH PAECPFYMKT 120 GTCQFGSACE FYHPKDRCPS GGGVIDGTDY GHDFATKSQS VLQQQEQAIY PERPGELECP 180 HYMKHGYCKF QMNCKFHHPR DRLPKKIGPL RYKQLP

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.6998	0.0	inflorescence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021318825.1	1e-137	uncharacterized protein LOC8054148 isoform X1
Refseq	XP_021318829.1	1e-137	uncharacterized protein LOC8054148 isoform X1
Refseq	XP_021318832.1	1e-137	uncharacterized protein LOC8054148 isoform X2
TrEMBL	A0A1Z5S5H7	1e-136	A0A1Z5S5H7_SORBI; Uncharacterized protein
STRING	Sb01g011590.1	1e-138	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	7e-39	floral homeotic protein (HUA1)