PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof013709
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family C3H
Protein Properties Length: 216aa    MW: 22973.7 Da    PI: 8.3765
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-64774PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.61.1e-085379127
               --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
               +++++C++f+rtG Ck G  Ck++H++
  Sof013709 53 PGQPECQYFMRTGGCKSGTMCKYNHPR 79
               5789*********************96 PP
2zf-CCCH33.47.8e-11102125427
                ---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                 +C ++a++G+C+yG  Ck+ H++
  Sof013709 102 QPCAYYAQNGYCRYGVACKYDHPM 125
                69********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003568.9E-55279IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.775280IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-65479IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-55680IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-698125IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.89298126IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-699127IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-8102125IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-5102123IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
PVACATGLEF RVDATRPHGS STTIAYGGAY LPYSSSTGRS SNNHQEHGFP ERPGQPECQY  60
FMRTGGCKSG TMCKYNHPRD WSTPKSNYMF SHLCLPLRPG AQPCAYYAQN GYCRYGVACK  120
YDHPMGTLGY SSSALPLSDM PIAPYPIGFS VATLAPSSSS PEYISTKDPS INQVASPVAA  180
PEHVGAILPK GVFPSDTIMR TQTSTSVGSS SPGGGR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.130841e-59bud| crown| inflorescence| meristem| root| seed
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002457593.11e-118zinc finger CCCH domain-containing protein 6 isoform X3
SwissprotQ5NAW21e-105C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6
TrEMBLA0A059Q1701e-125A0A059Q170_9POAL; Zinc finger CCCH type domain-containing protein
STRINGSb03g009930.11e-118(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.21e-43C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Friedrichs G,Fikri M,Guo Y,Temps F
    Time-resolved cavity ringdown measurements and kinetic modeling of the pressure dependences of the recombination reactions of SiH2 with the alkenes C2H4, C3H6, and t-C4H8.
    J Phys Chem A, 2008. 112(25): p. 5636-46
    [PMID:18512897]
  3. Ning H,Gong C,Li Z,Li X
    Pressure-dependent kinetics of initial reactions in iso-octane pyrolysis.
    J Phys Chem A, 2015. 119(18): p. 4093-107
    [PMID:25868004]