PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof013742
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family C3H
Protein Properties Length: 216aa    MW: 24445.5 Da    PI: 9.0724
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17329387PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.32.1e-06150171426
                ---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                + C++f++ G Ck+Gd C  aHg
  Sof013742 150 AACPDFRK-GGCKRGDACELAHG 171
                78******.*********99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.7E-4146172IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.873147173IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-4150171IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.7E-4151173IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
KKASTRARDR IHRPTKQKLP SQTDVPRNET TMMMMGEGAH APPWQQSPAA AISGGSMDAD  60
EAASPYALLS ALQHYLPSNE VAAAAYDEDE EEAAALAAVD AYACDEFRMY EFKVRRCLRG  120
RSHDWTDCPY AHPGEKARRR DPRRYHYSGA ACPDFRKGGC KRGDACELAH GVFECWLHPS  180
RYRTQPCKDR TRWRPPFLLF WAHAGTSFRL SGGRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.99750.0bud| callus| crown| inflorescence| leaf| root| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002440755.11e-100zinc finger CCCH domain-containing protein 35
SwissprotQ6L4N46e-77C3H35_ORYSJ; Zinc finger CCCH domain-containing protein 35
TrEMBLC5YUD46e-99C5YUD4_SORBI; Uncharacterized protein
STRINGSb09g006050.11e-100(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.12e-58C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]