PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof013842
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family GRAS
Protein Properties Length: 215aa    MW: 23759.3 Da    PI: 10.1087
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17309159PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS163.22.2e-50282102185
       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                 + L++cA+a+++gd + a+++L+++++++s +gd++qRla +f+e+L+arla+++s++y++l +++ts   ++e l+a+klf  +  + k+  +  N+ 
  Sof013842  28 HTMLIHCAQAMATGDRRSATEMLKQIKQHSSLRGDATQRLAYCFAEGLEARLAGTGSQVYQSLVAKRTS---VVEFLKAYKLFLAAISLNKVHIIFSNRN 124
                578***************************************************************999...**************************** PP

       GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185
                I++av g +++Hi+ +++++GlQWp Ll+ La R++gpp++R Tg++ p++g   + ++eetg+rL++ A+e++vpf+f++++ak 
  Sof013842 125 IVDAVVGRSKLHIVAYGVQYGLQWPGLLHLLAGREGGPPEVRFTGIDLPQPGfrPAYQIEETGHRLNNCAREFRVPFKFHAITAKV 210
                ***************************************************99999*************************87665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098535.1711215IPR005202Transcription factor GRAS
PfamPF035147.5E-4828210IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
SESEKSARRV SGKGARGKQH GNEFVDLHTM LIHCAQAMAT GDRRSATEML KQIKQHSSLR  60
GDATQRLAYC FAEGLEARLA GTGSQVYQSL VAKRTSVVEF LKAYKLFLAA ISLNKVHIIF  120
SNRNIVDAVV GRSKLHIVAY GVQYGLQWPG LLHLLAGREG GPPEVRFTGI DLPQPGFRPA  180
YQIEETGHRL NNCAREFRVP FKFHAITAKV GDDLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-263321225201Protein SCARECROW
5b3h_A2e-263321224200Protein SCARECROW
5b3h_D2e-263321224200Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.227360.0crown| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in cotyledons, leaves and flowers, and in the elongation zone in root. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008677823.11e-139scarecrow-like protein 34
SwissprotO809336e-60SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A3L6EWV61e-137A0A3L6EWV6_MAIZE; Scarecrow-like protein 14
STRINGGRMZM5G868355_P011e-144(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.12e-62GRAS family protein