PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof013856
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family WRKY
Protein Properties Length: 215aa    MW: 23471.4 Da    PI: 9.0504
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17464996PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY26.51.2e-08137189254
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYeg 54 
                d  y+WrKYGqK vk+++ ++       ++ p  k +e +ae   +v++tYe 
  Sof013856 137 DHRYKWRKYGQKGVKNQPPSKELLPWHPQHLPRDKPIEEAAEGLPIVITTYEA 189
                567****************9999999999999999999999999999999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-10121189IPR003657WRKY domain
SuperFamilySSF1182901.27E-6129189IPR003657WRKY domain
PROSITE profilePS5081112.771131196IPR003657WRKY domain
PfamPF031067.9E-5139188IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
XPHASDKLLQ MPLVQEPAAN NHHGVMLFSD HHQHGGLLYP LLLPGIPFCP SAAAATCEKT  60
TTTGFAALDA GEAGRTSTAK ARREIASTTT TTCNGPSSCN WWKGPAAAGE KGRMKVKKKM  120
REPKFCFQTR NDLDVLDHRY KWRKYGQKGV KNQPPSKELL PWHPQHLPRD KPIEEAAEGL  180
PIVITTYEAG QRLPLHNNAD AAAGDHTGSC AFTSL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111119GRMKVKKKM
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.143630.0crown| inflorescence| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002448267.25e-75probable WRKY transcription factor 57 isoform X2
TrEMBLA0A2K9UZ961e-93A0A2K9UZ96_9POAL; WRKY transcription factor 4
STRINGSb06g024220.12e-74(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44745.15e-24WRKY family protein