PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof013902
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family C2H2
Protein Properties Length: 214aa    MW: 23455.1 Da    PI: 7.8804
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-45016PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.000177192223
               EETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
               kC++C++ F +  n++rH r+H
  Sof013902 71 KCTKCSREFCSAINFRRHTRVH 92
               7*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.5777092IPR007087Zinc finger, C2H2
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MNASRKSNHV SSKDSAETAR DIITTSGQIQ PLKIPDAVAA LAQAAAKANG ETEKYLPGWP  60
LFSRPKVQLD KCTKCSREFC SAINFRRHTR VHRRTLKIDR DFPKNRDPLA AFWNKLTVDD  120
ASTILSLTGV VVEGVTGSSI LTALSSWMCK PGYASLPMAY ARAGSELXGS DSNKASMHLP  180
VSXDELFSLL DEASEKTFFC PIQLADTEVF FDGE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.73530.0inflorescence| leaf| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008668277.11e-121uncharacterized protein LOC100381642 isoform X1
TrEMBLA0A1D6ELS21e-120A0A1D6ELS2_MAIZE; C2H2-like zinc finger protein
STRINGGRMZM2G142502_P021e-120(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.11e-43C2H2-like zinc finger protein